JProfileGrid Source Docs 17-Jan-2013

Project website
	http://www.profilegrid.org/

Please cite:
	Alberto I Roca, Aaron C Abajian, David J Vigerust
	ProfileGrids solve the large alignment visualization problem:
		influenza hemagglutinin example
	F1000Research 2:2 (2013)

A maven file (pom.xml) will create the binary file using the following
command within the JProfileGrid_2_0_5 directory:
% mvn clean package assembly:single

The resulting binary 'JProfileGrid-2.0-FINAL-jar-with-dependencies.jar' 
was renamed to 'JProfileGrid2.jar'.

To run the application with a large allocation of memory use the command:
% java -Xmx1024M -jar JProfileGrid2.jar
